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European Journal of Prosthodontics and Restorative Dentistry  —  Vol. 34, Issue 3 (August 2026) ← Back to issue
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Multitarget Inhibition of MRSA Cell-Wall Biosynthesis by Zanthoxylum acanthopodium: Gene Expression, and Molecular Docking for Antibiotic-Resistant Oral Infections

DOI: 10.1922/ejprd.v34i3.1652
Keywords

Zanthoxylum acanthopodium; MRSA; murA; mecA; molecular docking; phytochemicals

Authors

Yumi Lindawati1,2*
Doctoral Study Program in Medical Science,
Faculty of Medicine, Universitas Padjadjaran,
Indonesia ; lindawatiyumi@gmail.com
Oral Biology Department, Faculty of Dentistry,
Universitas Sumatera Utara, Indonesia ;
yumi.lindawati@usu.ac.id
https://orcid.org/0000-0001-8176-0965

Mieke Hemiawati3,4
Departmeny of Oral Biology, Faculty of
Dentistry, Universitas Padjadjaran, Indonesia
Faculty of Medicine, Universitas Islam
Bandung, Indonesia;
satarimieke15@gmail.com
https://orcid.org/0000-0002-6021-9480

Ani Melani3,5
Departmeny of Oral Biology, Faculty of
Dentistry, Universitas Padjadjaran, Indonesia
Department of Oral Biology and Biomedical,
Faculty of Dentistry, Universitas Jenderal
Achmad Yani, Indonesia;
ani.melani@fkg.unjani.ac.id
https://orcid.org/0000-0001-7707-0582

Ameta Primasari2
Department of Oral Biology, Faculty of
Dentistry, Universitas Sumatera Utara,
Indonesia
ameta.primasari@usu.ac.id
https://orcid.org/0000-0003-2604-2578

*Correspondence to :
Yumi Lindawati1,2*
Doctoral Study Program in Medical Science,
Faculty of Medicine, Universitas Padjadjaran,
Jl. Ir. Soekarno Km 21, Jatinangor, Sumedang,
45363, Jawa Barat, Indonesia ;
lindawatiyumi@gmail.com
Department of Oral Biology, Faculty of
Dentistry, Universitas Sumatera Utara, Jl.
Alumni No.2 Kampus USU, Medan 20155,
Sumatera Utara, Indonesia ;
yumi.lindawati@usu.ac.id
https://orcid.org/0000-0001-8176-0965

Received:16-06-2026
Revised: 22-07-2026
Accepted: 30-07-2026

European Journal of Prosthodontics and Restorative Dentistry (2026) 34 (3), 24–33

Multitarget Inhibition of MRSA Cell-Wall Biosynthesis by Zanthoxylum acanthopodium: Gene Expression, and Molecular Docking for Antibiotic Resistant Oral Infections

Abstract

Objective: Methicillin-resistant Staphylococcus aureus (MRSA) has emerged as an important pathogen in persistent oral infections because of its resistance to β-lactam antibiotics. This study investigated the antibacterial potential of the methanolic fraction of Zanthoxylum acanthopodium against MRSA by evaluating its effects on murA and mecA gene expression and characterizing the molecular interactions of its major phytochemicals with murA and penicillin-binding protein 2a (PBP2a). Methods: The methanolic fraction of Z. acanthopodium fruit, , was tested against MRSA ATCC 33591 at concentrations of 25, 50, and 100 mg/mL. Relative murA and mecA mRNA expression levels were quantified using quantitative real-time PCR and analyzed with the 2^-ΔΔCt method. Statistical analysis used the Shapiro-Wilk and Kruskal-Wallis tests. Molecular docking was conducted using AutoDock 4.2 to evaluate the binding interactions of the identified phytochemicals containing diosmetin, eucalyptol, and gallotannin with murA and PBP2a. Results: The greatest biological suppression of murA and mecA expression occurred at 50 mg/mL, reducing relative expression to .84-fold and .15-fold, respectively, compared with untreated controls. Although the differences among treatment groups were not statistically significant (murA, p = .39; mecA, p = .42), the observed transcriptional trend suggested coordinated inhibition of bacterial cell-wall biosynthesis and methicillin resistance pathways. Molecular docking showed that diosmetin had the most favorable interactions with both murA and PBP2a, while eucalyptol and gallotannin also formed stable non-covalent interactions with both target proteins, which supports a multitarget antibacterial mechanism. Conclusion: The methanolic fraction of Z. acanthopodium exhibits promising anti-MRSA activity through simultaneous modulation of murA and mecA and predicted interactions with murA and PBP2a. These findings indicate Z. acanthopodium as a potential source of adjunctive phytotherapeutic agents for managing antibiotic-resistant oral infections. Further functional, pharmacological, and clinical studies are needed to validate its translational application in evidence-based dental practice.

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Article Information
Pages
24 – 33
Cover Date
August 2026
Volume
34
Issue
3
Print ISSN
0965-7452
Electronic ISSN
2396-8893